Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
EDS07456.1ABC transporter substrate binding protein; COG: COG2984 ABC-type uncharacterized transport system, periplasmic component. (356 aa)    
Predicted Functional Partners:
EDS07457.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: eco:b4460 0.00018 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K02057; COG: COG4120 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.998
glnQ_2
KEGG: reh:H16_A1397 1.5e-57 ABC-type transporter, ATPase component; COG: COG1101 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.955
dut-2
dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
       0.484
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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