Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS07471.1Hypothetical protein; KEGG: tma:TM0539 5.3e-10 tryptophan synthase beta chain K06001; COG: COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB). (50 aa)    
Predicted Functional Partners:
TrpB
Hypothetical protein; KEGG: aae:aq_1410 2.0e-22 trpB2; tryptophan synthase beta chain K06001; COG: COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB); Psort location: Cytoplasmic, score: 8.87.
 
     0.874
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.507
rpmI
COG: COG0291 Ribosomal protein L35; Psort location: Extracellular, score: 8.82; Belongs to the bacterial ribosomal protein bL35 family.
       0.443
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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