Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gntR_2Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 3.6e-05 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (214 aa)    
Predicted Functional Partners:
EDS06368.1
Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 6.7e-14 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.773
GarR_2
Putative 2-hydroxy-3-oxopropionate reductase; KEGG: sec:SC3195 1.9e-75 garR, tsaR; tartronate semialdehyde reductase (TSAR) K00042; COG: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
 
     0.600
EDS07489.1
Hypothetical protein; KEGG: ath:At1g18270 1.7e-84 T10O22.24; ketose-bisphosphate aldolase class-II family protein K00120; COG: KOG4153 Fructose 1,6-bisphosphate aldolase; Psort location: Cytoplasmic, score: 8.87.
 
     0.585
pdhR
KEGG: reh:H16_A1958 9.4e-05 transcriptional regulator, MocR family; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.546
gntT
Transporter, gluconate:H+ symporter family; KEGG: eci:UTI89_C3106 1.3e-60 ygbN; hypothetical permease YgbN K03299; COG: COG2610 H+/gluconate symporter and related permeases; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.400
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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