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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07490.1Hypothetical protein; KEGG: ath:At1g18270 9.2e-09 T10O22.24; ketose-bisphosphate aldolase class-II family protein K00120; COG: COG3395 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (434 aa)    
Predicted Functional Partners:
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: fnu:FN0226 1.7e-122 pdxA; pyridoxal phosphate biosynthetic protein pdxA K00097; COG: COG1995 Pyridoxal phosphate biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.950
gntT
Transporter, gluconate:H+ symporter family; KEGG: eci:UTI89_C3106 1.3e-60 ygbN; hypothetical permease YgbN K03299; COG: COG2610 H+/gluconate symporter and related permeases; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.930
KdgT
Putative 2-keto-3-deoxygluconate transporter; COG: NOG06082 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.689
EDS07489.1
Hypothetical protein; KEGG: ath:At1g18270 1.7e-84 T10O22.24; ketose-bisphosphate aldolase class-II family protein K00120; COG: KOG4153 Fructose 1,6-bisphosphate aldolase; Psort location: Cytoplasmic, score: 8.87.
 
     0.683
glpR_2
Transcriptional regulator, DeoR family; COG: COG1349 Transcriptional regulators of sugar metabolism; Psort location: Cytoplasmic, score: 8.87.
 
    0.626
GarR_2
Putative 2-hydroxy-3-oxopropionate reductase; KEGG: sec:SC3195 1.9e-75 garR, tsaR; tartronate semialdehyde reductase (TSAR) K00042; COG: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
 
  
 0.601
EDS08022.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.451
EDS05153.1
Hypothetical protein; COG: COG5441 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.444
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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