STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glpR_2Transcriptional regulator, DeoR family; COG: COG1349 Transcriptional regulators of sugar metabolism; Psort location: Cytoplasmic, score: 8.87. (249 aa)    
Predicted Functional Partners:
FruA
KEGG: cpr:CPR_0550 3.4e-163 fructose specific permease K00890; COG: COG1299 Phosphotransferase system, fructose-specific IIC component; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.845
pfkB
1-phosphofructokinase; KEGG: cac:CAC2951 1.0e-58 lacC; tagatose-6-phosphate kinase K00917; COG: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Psort location: Cytoplasmic, score: 8.87; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.696
pfkB-2
1-phosphofructokinase; KEGG: cno:NT01CX_1725 2.2e-88 1-phosphofructokinase K00882; COG: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.692
gntT
Transporter, gluconate:H+ symporter family; KEGG: eci:UTI89_C3106 1.3e-60 ygbN; hypothetical permease YgbN K03299; COG: COG2610 H+/gluconate symporter and related permeases; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.679
EDS07490.1
Hypothetical protein; KEGG: ath:At1g18270 9.2e-09 T10O22.24; ketose-bisphosphate aldolase class-II family protein K00120; COG: COG3395 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
    0.626
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: fnu:FN0226 1.7e-122 pdxA; pyridoxal phosphate biosynthetic protein pdxA K00097; COG: COG1995 Pyridoxal phosphate biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.588
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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