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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpAScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (249 aa)    
Predicted Functional Partners:
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.966
EDS07371.1
Transglycosylase SLT domain protein; KEGG: sat:SYN_01413 3.3e-09 soluble lytic murein transglycosylase K01238; COG: COG0419 ATPase involved in DNA repair; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.711
EDS07576.1
Ser/Thr phosphatase family protein; KEGG: bce:BC2476 3.1e-34 phosphoesterase; COG: COG1408 Predicted phosphohydrolases; Psort location: Cytoplasmic, score: 8.87.
       0.696
cmk
Cytidylate kinase; KEGG: ljo:LJ1089 2.3e-52 cytidylate kinase K00945; COG: COG0283 Cytidylate kinase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.695
dacF_1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: tte:TTE1328 6.6e-48 dacC3; D-alanyl-D-alanine carboxypeptidase K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
    0.654
swrC
RND transporter, HAE1/HME family, permease protein; KEGG: eci:UTI89_C2351 1.8e-66 yegO; hypothetical protein YegO K07789; COG: COG0841 Cation/multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.632
EDS06301.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.598
smc_2
Efflux ABC transporter, permease protein; KEGG: cal:orf19.6148 2.1e-08 USO2; intracellular protein transport K01553; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.598
EDS08631.1
Hypothetical protein; KEGG: sab:SAB1204 0.00010 exonuclease K03546; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.578
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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