STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07587.1Hypothetical protein; COG: COG1300 Uncharacterized membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (189 aa)    
Predicted Functional Partners:
act
Hydrolase, NUDIX family; KEGG: gka:GK2320 9.4e-33 ADP-ribose pyrophosphatase K01515; COG: COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Psort location: Cytoplasmic, score: 8.87.
       0.727
EDS07585.1
Aminotransferase, class I/II; KEGG: ctc:CTC01294 1.1e-118 aspartate aminotransferase K00812; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase.
  
    0.589
rny_2
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.454
EDS07584.1
Hypothetical protein.
       0.437
EDS08105.1
Putative stage III sporulation protein AB; COG: NOG16867 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
  
 0.432
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.