Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
spoVBCOG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99. (442 aa)    
Predicted Functional Partners:
spoVT
Stage V sporulation protein T; COG: COG2002 Regulators of stationary/sporulation gene expression; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.847
EDS08280.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.768
spoIIP
Stage II sporulation protein P; COG: NOG13213 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.753
SpoIIIAE
Putative stage III sporulation protein AE; COG: NOG06161 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.725
ylbJ
Putative sporulation integral membrane protein YlbJ; COG: COG3314 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.724
yabP
Sporulation protein YabP; COG: NOG13819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.687
EDS08107.1
Stage III sporulation protein AD; COG: NOG13205 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.668
spoIVB
SpoIVB peptidase; KEGG: btl:BALH_3781 9.1e-51 spoIVB; stage IV sporulation protein B; COG: COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
    0.659
EDS08110.1
Putative stage III sporulation protein AG; COG: NOG11553 non supervised orthologous group.
  
    0.646
spoIVA
Stage IV sporulation protein A; COG: NOG05962 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.643
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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