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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sglTTransporter, SSS family; KEGG: rpr:RP465 2.5e-07 phoR; alkaline phosphatase synthesis sensor protein phoR K07636; COG: COG0591 Na+/proline symporter; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (501 aa)    
Predicted Functional Partners:
tabA
YhcH/YjgK/YiaL family protein; COG: COG2731 Beta-galactosidase, beta subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.934
nanA
KEGG: spn:SP_1676 1.1e-118 N-acetylneuraminate lyase K01639; COG: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.848
nanE
Putative N-acetylmannosamine-6-phosphate epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.813
ybbH_3
SIS domain protein; KEGG: cac:CAC0397 6.0e-08 predicted sugar phosphate aminotransferase involved in capsule formation K08094; COG: COG1737 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.764
bglK
ROK family protein; KEGG: spj:MGAS2096_Spy0236 3.9e-91 N-acetylmannosamine kinase / transcriptional regulator K00885; COG: COG1940 Transcriptional regulator/sugar kinase; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.722
AdhE
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2540 0. aldehyde-alcohol dehydrogenase [includes: alcohol K00001:K04072; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.626
nagA
KEGG: tte:TTE0232 6.9e-69 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443; COG: COG1820 N-acetylglucosamine-6-phosphate deacetylase; Psort location: Cytoplasmic, score: 8.87.
 
    0.608
EDS07333.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.541
betB
Aldehyde dehydrogenase (NAD) family protein; KEGG: tde:TDE0080 1.3e-175 gbsA; betaine aldehyde dehydrogenase K00130; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.518
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.452
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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