Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07368.1MT-A70; KEGG: spj:MGAS2096_Spy1128 2.2e-56 adenine-specific methyltransferase K00571; COG: COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the MT-A70-like family. (187 aa)    
Predicted Functional Partners:
EDS07369.1
Hypothetical protein; KEGG: pfl:PFL_3331 0.0029 nudF; ADP-ribose pyrophosphatase K01515; COG: NOG16905 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS07366.1
Hypothetical protein.
       0.686
EDS07367.1
Hypothetical protein.
       0.686
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.637
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
  0.608
EDS08778.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
 
     0.557
EDS08776.1
Hypothetical protein; KEGG: vfi:VFB02 0.0054 traC; DNA primase TraC; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.534
EDS08780.1
Hypothetical protein; KEGG: pca:Pcar_2039 0.00092 ribonuclease, Rne/Rng family protein; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Cytoplasmic, score: 8.87.
 
     0.522
EDS06380.1
DNA primase small subunit; KEGG: ddi:DDB0214830 0.00013 repB; transcription factor IIH subunit K01529; COG: COG4951 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
    0.520
EDS05579.1
LPXTG-motif cell wall anchor domain protein; COG: NOG36404 non supervised orthologous group.
 
     0.512
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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