Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07370.1Hypothetical protein; KEGG: pub:SAR11_0340 0.0040 coaE; dephospho-CoA kinase K00859; Psort location: Cytoplasmic, score: 8.87. (339 aa)    
Predicted Functional Partners:
EDS07371.1
Transglycosylase SLT domain protein; KEGG: sat:SYN_01413 3.3e-09 soluble lytic murein transglycosylase K01238; COG: COG0419 ATPase involved in DNA repair; Psort location: Cytoplasmic, score: 8.87.
       0.773
Noc
Hypothetical protein; KEGG: nwi:Nwi_0254 7.1e-05 helix-turn-helix, fis-type K00986; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.721
EDS06243.1
Restriction endonuclease; COG: NOG37482 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.668
fokIM
KEGG: hhe:HH1050 1.4e-14 putative site-specific DNA-methyltransferase K07318; COG: COG3392 Adenine-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
  
     0.665
EDS07373.1
VRR-NUC domain protein.
 
     0.575
EDS06360.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.517
EDS07374.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.494
EDS07368.1
MT-A70; KEGG: spj:MGAS2096_Spy1128 2.2e-56 adenine-specific methyltransferase K00571; COG: COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the MT-A70-like family.
       0.475
EDS07369.1
Hypothetical protein; KEGG: pfl:PFL_3331 0.0029 nudF; ADP-ribose pyrophosphatase K01515; COG: NOG16905 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.475
EDS07375.1
Hypothetical protein.
       0.470
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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