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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07379.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
EDS08500.1
Hypothetical protein.
     
  0.900
EDS07699.1
DRTGG domain protein; KEGG: ctc:CTC01649 1.1e-123 putative manganese-dependent inorganic pyrophosphatase K01507; COG: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; Psort location: Cytoplasmic, score: 8.87.
     
  0.900
EDS07380.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.768
Noc
Hypothetical protein; KEGG: nwi:Nwi_0254 7.1e-05 helix-turn-helix, fis-type K00986; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.768
mazF
PemK-like protein; COG: COG2337 Growth inhibitor; Psort location: Cytoplasmic, score: 8.87.
       0.677
EDS07383.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.677
ssb_2
KEGG: shn:Shewana3_3590 1.7e-16 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
       0.677
EDS07385.1
Hypothetical protein.
       0.623
EDS07386.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.623
parA
CobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: cch:Cag_1803 5.1e-25 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
       0.570
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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