Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07380.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (107 aa)    
Predicted Functional Partners:
Noc
Hypothetical protein; KEGG: nwi:Nwi_0254 7.1e-05 helix-turn-helix, fis-type K00986; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS07379.1
Hypothetical protein.
       0.768
mazF
PemK-like protein; COG: COG2337 Growth inhibitor; Psort location: Cytoplasmic, score: 8.87.
       0.682
EDS07383.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.682
ssb_2
KEGG: shn:Shewana3_3590 1.7e-16 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
       0.682
EDS07385.1
Hypothetical protein.
       0.627
EDS07386.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.627
parA
CobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: cch:Cag_1803 5.1e-25 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
       0.566
EDS07377.1
Hypothetical protein.
       0.566
dcm-2
KEGG: cac:CAC1222 4.8e-100 DNA-methyltransferase (cytosine-specific) K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
       0.566
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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