close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07388.1COG: COG3747 Phage terminase, small subunit; Psort location: Cytoplasmic, score: 8.87. (180 aa)    
Predicted Functional Partners:
EDS07389.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
    0.930
EDS07390.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein.
 
  
 0.925
EDS07392.1
Phage major capsid protein, HK97 family; COG: NOG26567 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.887
clpP-3
KEGG: lsl:LSL_0785 2.8e-24 clpP; ATP-dependent Clp protease proteolytic subunit K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S14 family.
 
    0.840
EDS07387.1
HNH endonuclease domain protein; COG: COG1403 Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87.
  
    0.827
EDS07397.1
Phage major tail protein, phi13 family; COG: NOG22717 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.635
EDS07394.1
Putative phage head-tail adaptor; Psort location: Cytoplasmic, score: 8.87.
       0.578
EDS07393.1
Phage DNA packaging protein.
       0.561
EDS08659.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.514
EDS07395.1
Phage protein, HK97 gp10 family; Psort location: Cytoplasmic, score: 8.87.
       0.495
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.