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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07390.1Phage portal protein, HK97 family; COG: COG4695 Phage-related protein. (476 aa)    
Predicted Functional Partners:
EDS07392.1
Phage major capsid protein, HK97 family; COG: NOG26567 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.956
EDS07389.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.954
EDS07388.1
COG: COG3747 Phage terminase, small subunit; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.925
clpP-3
KEGG: lsl:LSL_0785 2.8e-24 clpP; ATP-dependent Clp protease proteolytic subunit K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S14 family.
 
  
 0.901
EDS08657.1
Phage capsid family; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.822
EDS08661.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.783
EDS05497.1
Hypothetical protein; COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.780
EDS07397.1
Phage major tail protein, phi13 family; COG: NOG22717 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.754
EDS08240.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.742
clpP
KEGG: bca:BCE_0399 2.9e-54 clpP; ClpP protease family protein K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 9.65; Belongs to the peptidase S14 family.
 
  
 0.714
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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