Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS07392.1Phage major capsid protein, HK97 family; COG: NOG26567 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (455 aa)    
Predicted Functional Partners:
EDS07390.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein.
 
 
 
 0.946
EDS07389.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.936
EDS07388.1
COG: COG3747 Phage terminase, small subunit; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.894
clpP-3
KEGG: lsl:LSL_0785 2.8e-24 clpP; ATP-dependent Clp protease proteolytic subunit K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S14 family.
 
    0.814
EDS07394.1
Putative phage head-tail adaptor; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.738
EDS07397.1
Phage major tail protein, phi13 family; COG: NOG22717 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.723
EDS08659.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.660
EDS07393.1
Phage DNA packaging protein.
       0.605
EDS07402.1
Phage minor structural protein, N-terminal domain protein; COG: NOG20085 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.596
EDS07387.1
HNH endonuclease domain protein; COG: COG1403 Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87.
     
 0.586
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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