Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smc_3Phage tail tape measure protein, TP901 family; KEGG: cal:orf19.2410 7.0e-08 IMH1; involved in vesicular transport K01553; COG: COG5280 Phage-related minor tail protein; Psort location: Cellwall, score: 9.17. (1117 aa)    
Predicted Functional Partners:
EDS07401.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.815
EDS08650.1
Hypothetical protein; COG: NOG18353 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.814
EDS08651.1
Phage major tail protein, phi13 family; COG: NOG11304 non supervised orthologous group.
 
     0.812
EDS07402.1
Phage minor structural protein, N-terminal domain protein; COG: NOG20085 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.795
EDS08652.1
Hypothetical protein; COG: NOG18352 non supervised orthologous group.
 
     0.793
EDS07403.1
Hypothetical protein; KEGG: hwa:HQ3250A 0.0032 atpH; H(+)-transporting two-sector ATPase, subunit H (A-type ATP synthase) K01549; COG: COG0419 ATPase involved in DNA repair; Psort location: Cytoplasmic, score: 8.87.
       0.787
EDS08653.1
Hypothetical protein; COG: NOG18351 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.771
EDS08655.1
Phage DNA packaging protein; COG: NOG22900 non supervised orthologous group.
 
     0.754
EDS08654.1
Putative phage head-tail adaptor.
 
    0.752
EDS08234.1
Hypothetical protein; COG: NOG18351 non supervised orthologous group.
 
     0.744
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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