Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07435.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (163 aa)    
Predicted Functional Partners:
EDS07436.1
DNA-binding helix-turn-helix protein; COG: COG3655 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.732
EDS07437.1
Hypothetical protein; KEGG: hma:rrnAC2430 0.0014 rpoB; DNA-directed RNA polymerase subunit B K03045; COG: COG3877 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.429
RclA
KEGG: eci:UTI89_C0327 2.2e-113 ykgC; probable pyridine nucleotide-disulfide oxidoreductase YkgC; COG: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; Psort location: Cytoplasmic, score: 9.65.
       0.422
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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