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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07197.1Putative RNA polymerase sigma factor; KEGG: mxa:MXAN_4460 7.5e-12 valS; valyl-tRNA synthetase K01873; COG: NOG11724 non supervised orthologous group. (196 aa)    
Predicted Functional Partners:
EDS06305.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.612
EDS06859.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.610
EDS08153.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80.
  
     0.607
EDS07567.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.587
EDS08474.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.586
EDS06332.1
Tetratricopeptide repeat protein; KEGG: mpe:MYPE6470 1.2e-26 parC; DNA topoisomerase IV subunit A K02621; COG: KOG1181 FOG: Low-complexity; Psort location: Extracellular, score: 7.62.
  
     0.585
EDS06301.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.584
EDS04898.1
KEGG: cyb:CYB_1515 0.00089 tetratricopeptide repeat/protein kinase domain protein K08884; COG: COG0457 FOG: TPR repeat.
  
     0.546
EDS06910.1
Hypothetical protein; KEGG: oih:OB2490 0.00066 carboxy-terminal processing protease K03797.
  
     0.510
EDS08713.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.498
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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