Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07198.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (284 aa)    
Predicted Functional Partners:
EDS04907.1
Hypothetical protein; COG: COG3595 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.504
EDS05837.1
Hypothetical protein; COG: COG0716 Flavodoxins; Psort location: Cytoplasmic, score: 8.87.
  
     0.491
EDS07197.1
Putative RNA polymerase sigma factor; KEGG: mxa:MXAN_4460 7.5e-12 valS; valyl-tRNA synthetase K01873; COG: NOG11724 non supervised orthologous group.
       0.472
cmk_1
Hypothetical protein; KEGG: sat:SYN_01231 5.5e-28 cytidylate kinase K00945; COG: NOG14451 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.414
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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