Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
srpR_1Transcriptional regulator, TetR family; KEGG: bha:BH3415 5.1e-10 NADH dehydrogenase K03885; COG: NOG38850 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (197 aa)    
Predicted Functional Partners:
cysK-2
Cysteine synthase A; KEGG: bld:BLi00089 7.0e-76 cysK; cysteine synthetase A; RBL03196 K01738; COG: COG0031 Cysteine synthase; Psort location: Cytoplasmic, score: 8.87.
       0.620
EDS07200.1
Hypothetical protein; KEGG: rha:RHA1_ro04508 4.5e-05 atzB; hydroxydechloroatrazine ethylaminohydrolase K03382; COG: COG1228 Imidazolonepropionase and related amidohydrolases.
       0.583
psd
KEGG: cac:CAC0799 6.4e-50 psd; phosphatidylserine decarboxylase K01613; COG: COG0688 Phosphatidylserine decarboxylase; Psort location: Cytoplasmic, score: 8.87.
       0.488
mtrR_2
Transcriptional regulator, TetR family; KEGG: bha:BH3415 0.00026 NADH dehydrogenase K03885; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
     0.469
EDS07204.1
CDP-alcohol phosphatidyltransferase; KEGG: cac:CAC0798 1.2e-30 phosphatidylserine synthase K00998; COG: COG1183 Phosphatidylserine synthase; Psort location: CytoplasmicMembrane, score: 9.97.
       0.419
cmk_1
Hypothetical protein; KEGG: sat:SYN_01231 5.5e-28 cytidylate kinase K00945; COG: NOG14451 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.407
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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