Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS07212.1Hypothetical protein; COG: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein). (72 aa)    
Predicted Functional Partners:
opuBA
Hypothetical protein; KEGG: pen:PSEEN3440 7.1e-10 ABC transporter, ATP-binding protein; COG: COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.998
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.689
mprA_2
Transcriptional regulator, MarR family; COG: NOG36306 non supervised orthologous group.
 
  
 0.588
EDS07213.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.562
EDS07214.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.562
slyA_2
Transcriptional regulator, MarR family; COG: NOG16844 non supervised orthologous group.
  
  
 0.515
slyA_1
Transcriptional regulator, MarR family; KEGG: cvi:CV3636 0.00045 putative acetyltransferase K03828; COG: COG1846 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.515
zitR
Transcriptional regulator, MarR family; COG: COG1846 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.515
EDS05209.1
Transcriptional regulator, MarR family; KEGG: cvi:CV3636 0.0070 putative acetyltransferase K03828; COG: COG1846 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.515
AdhE
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2540 0. aldehyde-alcohol dehydrogenase [includes: alcohol K00001:K04072; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.514
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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