Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trxB_1Pyridine nucleotide-disulfide oxidoreductase; KEGG: mta:Moth_2420 1.8e-54 thioredoxin reductase K00384; COG: COG0492 Thioredoxin reductase; Psort location: Cytoplasmic, score: 9.65. (298 aa)    
Predicted Functional Partners:
trxB-2
KEGG: bha:BH3571 3.0e-68 trxB; thioredoxin reductase (NADPH) K00384; COG: COG0492 Thioredoxin reductase; Psort location: Cytoplasmic, score: 9.98.
  
  
 
0.911
trxB
KEGG: tte:TTE1881 6.8e-94 trxB; thioredoxin reductase K00384; COG: COG0492 Thioredoxin reductase; Psort location: Cytoplasmic, score: 9.98.
  
  
 
0.909
selD
KEGG: cpf:CPF_2374 1.6e-92 selD; selenide, water dikinase K01008; COG: COG0709 Selenophosphate synthase.
     
 0.907
sfrB_2
Putative selenate reductase, YgfK subunit; KEGG: eci:UTI89_C3263 4.3e-195 ygfK; hypothetical protein YgfK K05299; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score: 9.98.
  
 
  0.905
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.469
EDS07215.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.460
EDS06153.1
NADH oxidase; KEGG: afu:AF1262 5.9e-95 noxB-2; NADH oxidase (NoxB-2) K00359; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.415
EDS05762.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: afu:AF0455 1.4e-95 noxB-1; NADH oxidase (NoxB-1) K00359; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.403
EDS05767.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: afu:AF1262 4.9e-84 noxB-2; NADH oxidase (NoxB-2) K00359; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.403
malK
ABC transporter, ATP-binding protein; KEGG: pfo:Pfl_4466 6.8e-23 ABC transporter-like K02052; COG: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
     0.403
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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