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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MleN_2COG: COG1757 Na+/H+ antiporter; Psort location: CytoplasmicMembrane, score: 9.99. (559 aa)    
Predicted Functional Partners:
EDS07239.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.563
EDS07236.1
Peptidase M16 inactive domain protein; KEGG: mxa:MXAN_1623 1.6e-09 peptidase, M16 (pitrilysin) family; COG: COG1026 Predicted Zn-dependent peptidases, insulinase-like; Psort location: Cytoplasmic, score: 8.87.
       0.559
EDS07237.1
Hypothetical protein.
       0.559
EDS07158.1
Hypothetical protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.501
panF
Transporter, SSS family; KEGG: rpr:RP465 9.2e-09 phoR; alkaline phosphatase synthesis sensor protein phoR K07636; COG: COG4145 Na+/panthothenate symporter; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.436
EDS07240.1
DNA-binding helix-turn-helix protein; COG: COG4636 Uncharacterized protein conserved in cyanobacteria; Psort location: Cytoplasmic, score: 8.87.
       0.421
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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