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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07260.1Hypothetical protein. (208 aa)    
Predicted Functional Partners:
srtB-2
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
 
 
   0.936
EDS07262.1
Pilin isopeptide linkage domain protein; KEGG: cal:orf19.4072 0.0010 HYR10; similar to cell surface flocculin K01186.
 
     0.918
pyk-2
Pyruvate kinase; KEGG: tte:TTE1815 8.7e-133 pykF; pyruvate kinase K00873; COG: COG0469 Pyruvate kinase; Psort location: Cytoplasmic, score: 8.87.
   
    0.765
lepB-4
KEGG: spb:M28_Spy0108 2.1e-21 signal peptidase I K03100; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S26 family.
 
     0.719
EDS07264.1
Von Willebrand factor type A domain protein; KEGG: lpl:lp_3093 0.0012 muramidase (putative) K01185; COG: NOG22929 non supervised orthologous group.
 
     0.619
srtB
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
 
 
   0.599
lepB
Signal peptidase I; KEGG: spk:MGAS9429_Spy0112 4.5e-26 signal peptidase I K03100; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S26 family.
 
     0.591
EDS08645.1
Phage minor structural protein, N-terminal domain protein; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
  
     0.500
EDS06305.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.475
EDS06530.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.75.
  
     0.467
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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