Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EDS07264.1Von Willebrand factor type A domain protein; KEGG: lpl:lp_3093 0.0012 muramidase (putative) K01185; COG: NOG22929 non supervised orthologous group. (800 aa)    
Predicted Functional Partners:
lepB-4
KEGG: spb:M28_Spy0108 2.1e-21 signal peptidase I K03100; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S26 family.
       0.774
EDS07260.1
Hypothetical protein.
 
     0.617
EDS07262.1
Pilin isopeptide linkage domain protein; KEGG: cal:orf19.4072 0.0010 HYR10; similar to cell surface flocculin K01186.
 
    
0.613
srtB-2
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
 
     0.576
xerD_1
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
       0.414
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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