close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_1Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family. (287 aa)    
Predicted Functional Partners:
XerD_6
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.687
xerD_3
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.476
spoIIIE
FtsK/SpoIIIE family protein; KEGG: reh:H16_A1582 1.5e-122 DNA segregation ATPase FtsK/SpoIIIE related protein; COG: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Psort location: CytoplasmicMembrane, score: 7.63.
  
   
 0.428
lepB-4
KEGG: spb:M28_Spy0108 2.1e-21 signal peptidase I K03100; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S26 family.
       0.424
EDS07264.1
Von Willebrand factor type A domain protein; KEGG: lpl:lp_3093 0.0012 muramidase (putative) K01185; COG: NOG22929 non supervised orthologous group.
       0.414
EDS05728.1
Hypothetical protein; KEGG: eba:ebA4079 0.0032 dnaB; replicative DNA helicase protein K02314; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.405
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.