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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recD2_1Hypothetical protein; KEGG: dde:Dde_2725 1.4e-26 helicase RecD/TraA K03581; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; Psort location: Cytoplasmic, score: 8.87. (113 aa)    
Predicted Functional Partners:
EDS07275.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     
 0.775
EDS07276.1
Sortase B cell surface sorting signal; Psort location: Cellwall, score: 9.97.
  
    0.727
EDS07277.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.585
EDS07278.1
Hypothetical protein.
       0.585
EDS07273.1
Hypothetical protein.
       0.509
addA
ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
  
 
 0.493
recQ
KEGG: cpf:CPF_0327 4.3e-140 recQ; ATP-dependent DNA helicase RecQ K03654; COG: COG0514 Superfamily II DNA helicase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.418
rep
Hypothetical protein; KEGG: gbe:GbCGDNIH1_1179 1.3e-76 DNA helicase II K01529; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.417
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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