Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS07283.1Hypothetical protein; COG: COG3694 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99. (244 aa)    
Predicted Functional Partners:
natA_1
KEGG: fal:FRAAL3905 1.7e-56 putative ABC-transport protein, ATP-binding component; COG: COG4586 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.973
EDS07284.1
Hypothetical protein; COG: COG4587 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.951
lanM
Type 2 lantibiotic biosynthesis protein LanM; COG: COG4403 Lantibiotic modifying enzyme; Psort location: Cytoplasmic, score: 8.87.
  
     0.614
EDS07280.1
Hypothetical protein.
       0.556
EDS07281.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.556
lacE_2
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 5.8e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.440
CycB
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 5.8e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.423
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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