Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
apaHSer/Thr phosphatase family protein; KEGG: cno:NT01CX_2416 6.1e-22 phosphodiesterase, MJ0936 family subfamily; COG: COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; Psort location: Cytoplasmic, score: 8.87. (248 aa)    
Predicted Functional Partners:
araQ_1
COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
       0.550
ugpA_1
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.535
CycB
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 5.8e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
       0.493
yteT_1
Oxidoreductase, NAD-binding domain protein; KEGG: bha:BH2220 1.9e-16 dehydrogenase K00010; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score: 8.87.
 
     0.478
EDS07286.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.461
rdgB
Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.430
EDS07285.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.409
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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