Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cutC_1Putative formate C-acetyltransferase; KEGG: gsu:GSU2101 4.5e-239 formate acetyltransferase K00656; COG: COG1882 Pyruvate-formate lyase; Psort location: Cytoplasmic, score: 9.98. (791 aa)    
Predicted Functional Partners:
bssD
Glycyl-radical enzyme activating protein family protein; KEGG: tko:TK0290 4.0e-57 pyruvate-formate lyase-activating enzyme K04069; COG: COG1180 Pyruvate-formate lyase-activating enzyme; Psort location: Cytoplasmic, score: 9.98.
 
  
 0.971
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.904
proC-2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.904
HpdA
Radical SAM domain protein; KEGG: dsy:DSY0417 1.5e-34 pyruvate-formate lyase-activating enzyme K04069; COG: COG1180 Pyruvate-formate lyase-activating enzyme; Psort location: Cytoplasmic, score: 9.98.
 
  
 0.888
EDS06623.1
KEGG: bce:BC2835 1.2e-66 proline racemase K01777; COG: COG3938 Proline racemase; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.833
pflA
Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
 
  
 0.676
pflA_1
Anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: tte:TTE1849 6.3e-43 pflA; pyruvate-formate lyase-activating enzyme K04069; COG: COG1180 Pyruvate-formate lyase-activating enzyme; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.642
qacR
Transcriptional regulator, TetR family; KEGG: bha:BH3415 2.2e-06 NADH dehydrogenase K03885; COG: NOG38850 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.521
YccX
Acylphosphatase; KEGG: cpe:CPE1973 3.8e-13 probable acylphosphatase K01512; COG: COG1254 Acylphosphatases; Psort location: Cytoplasmic, score: 8.87.
       0.512
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.510
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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