Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
natA_2KEGG: reh:H16_A2602 5.6e-35 ABC-type transporter, ATPase component: LOSE family; COG: COG4555 ABC-type Na+ transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (257 aa)    
Predicted Functional Partners:
NatB
Hypothetical protein; COG: COG1668 ABC-type Na+ efflux pump, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.990
LolD_2
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 3.9e-50 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
    
0.800
EDS07309.1
Sporulation protein, YlmC/YmxH family; COG: COG1873 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.551
fdx
4Fe-4S binding domain protein; KEGG: mth:MTH1819 3.7e-06 ferredoxin K00284:K00392; COG: COG1141 Ferredoxin; Psort location: Cytoplasmic, score: 8.87.
       0.480
EDS04857.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
 
 
 0.425
EDS05460.1
Hypothetical protein; COG: NOG13457 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
   0.405
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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