Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07314.1Hypothetical protein; COG: NOG07916 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99. (192 aa)    
Predicted Functional Partners:
EDS07315.1
COG: COG5418 Predicted secreted protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.848
EDS08609.1
Glycosyltransferase, group 2 family protein; KEGG: stm:STM2085 7.7e-54 rfbN; LPS side chain defect: rhamnosyl transferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.654
ykoC
COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.557
arcC1_1
Carbamate kinase; KEGG: tde:TDE2476 1.0e-81 arcC; carbamate kinase K00926; COG: COG0549 Carbamate kinase; Psort location: Cytoplasmic, score: 8.87.
       0.522
EDS05482.1
Hypothetical protein; COG: NOG17819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.434
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.422
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.416
ecfA2_2
KEGG: ser:SERP2358 1.3e-26 amino acid ABC transporter, ATP-binding protein K02000; COG: COG1122 ABC-type cobalt transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.413
fdx
4Fe-4S binding domain protein; KEGG: mth:MTH1819 3.7e-06 ferredoxin K00284:K00392; COG: COG1141 Ferredoxin; Psort location: Cytoplasmic, score: 8.87.
       0.409
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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