Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07001.1Hypothetical protein; COG: COG2966 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99. (415 aa)    
Predicted Functional Partners:
EDS08451.1
Hypothetical protein; COG: COG3610 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.801
EDS08022.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.612
EDS07053.1
Hypothetical protein; COG: NOG22749 non supervised orthologous group.
  
     0.565
EDS07002.1
Hypothetical protein; KEGG: cch:Cag_0337 0.0018 ATPase K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.75.
       0.532
EDS07003.1
Hypothetical protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
       0.532
EDS07004.1
Hypothetical protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
       0.498
EDS06911.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.459
resE_5
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bcz:BCZK4604 5.0e-50 vanS; sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.36.
  
     0.444
EDS05333.1
Acetyltransferase, GNAT family; KEGG: sto:ST2077 0.0060 N-terminal acetyltransferase complex ard1 subunit K03789; COG: NOG30432 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.433
EDS06332.1
Tetratricopeptide repeat protein; KEGG: mpe:MYPE6470 1.2e-26 parC; DNA topoisomerase IV subunit A K02621; COG: KOG1181 FOG: Low-complexity; Psort location: Extracellular, score: 7.62.
  
     0.419
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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