Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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msmE_3ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 1.0e-07 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component. (443 aa)    
Predicted Functional Partners:
ycjO_3
KEGG: pac:PPA0505 1.0e-05 ABC transporter, putative molybdenum transport system K02017:K02018; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.927
sugB_3
KEGG: ava:Ava_0243 3.0e-09 molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.921
btr_3
Response regulator receiver domain protein; KEGG: bcz:BCZK3497 3.3e-17 adaA; transcriptional regulator, AraC family K00567; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
     0.845
EDS07006.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 5.7e-08 beta-N-acetylhexosaminidase K01207; COG: NOG36584 non supervised orthologous group.
 
     0.801
YteP
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.776
EDS07008.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 2.3e-10 beta-N-acetylhexosaminidase K01207; COG: NOG23360 non supervised orthologous group.
 
     0.774
ypdA_4
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bld:BLi01366 5.0e-43 yesM; similar to two-component sensor histidine kinase [YesN]; RBL02409 K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.752
treP
Glycosyl hydrolase family 65 central catalytic domain protein; KEGG: nca:Noca_3421 5.8e-136 kojibiose phosphorylase; COG: COG1554 Trehalose and maltose hydrolases (possible phosphorylases); Psort location: Cytoplasmic, score: 8.87.
 
     0.731
ycjP_4
KEGG: ava:Ava_0243 1.7e-06 molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.658
AraN_1
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 3.0e-07 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87.
  
     0.656
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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