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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07019.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (43 aa)    
Predicted Functional Partners:
EDS07020.1
Hypothetical protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
       0.727
EDS07021.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 1.2e-50 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.727
EDS07018.1
Transposase-like protein; COG: COG1943 Transposase and inactivated derivatives.
       0.541
EDS07022.1
KEGG: tte:TTE0562 5.8e-13 baeS2; sensory transduction histidine kinases K07706; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: CytoplasmicMembrane, score: 7.63.
       0.435
ypdB
Response regulator receiver domain protein; KEGG: rru:Rru_A0376 3.8e-09 transcriptional regulator, LytR/AlgR family K07705; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 9.98.
       0.435
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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