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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07024.1Phage replisome organizer N-terminal domain protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (372 aa)    
Predicted Functional Partners:
EDS08791.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
 
     0.639
EDS07025.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.614
EDS08787.1
Hypothetical protein.
 
     0.611
EDS08792.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.607
dnaI_2
Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 6.3e-43 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.590
EDS07902.1
Relaxase/mobilization nuclease domain protein; KEGG: fnu:FN0522 0.0016 exonuclease SBCC K03546; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
 
     0.521
EDS07022.1
KEGG: tte:TTE0562 5.8e-13 baeS2; sensory transduction histidine kinases K07706; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: CytoplasmicMembrane, score: 7.63.
       0.484
ypdB
Response regulator receiver domain protein; KEGG: rru:Rru_A0376 3.8e-09 transcriptional regulator, LytR/AlgR family K07705; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 9.98.
       0.484
EDS06216.1
Hypothetical protein.
 
    0.473
EDS08795.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.471
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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