Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mobA_2Hypothetical protein; KEGG: ret:RHE_CH00726 3.9e-05 traAch; conjugal transfer protein A K01144; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. (243 aa)    
Predicted Functional Partners:
EDS07029.1
Hypothetical protein.
      0.952
EDS07032.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
     0.923
EDS07031.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.773
EDS05203.1
Hypothetical protein; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
     0.732
EDS07033.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.686
EDS08820.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.594
EDS08819.1
Virulence-associated protein E; COG: COG5545 Predicted P-loop ATPase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.563
DnaG_2
Hypothetical protein; KEGG: mmy:MSC_0465 0.0027 dnaG; DNA primase K02316.
 
  
 0.530
EDS07618.1
Hypothetical protein.
  
     0.525
EDS07027.1
Addiction module antitoxin, RelB/DinJ family; COG: COG3077 DNA-damage-inducible protein J.
  
     0.499
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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