Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07032.1Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87. (126 aa)    
Predicted Functional Partners:
mobA_2
Hypothetical protein; KEGG: ret:RHE_CH00726 3.9e-05 traAch; conjugal transfer protein A K01144; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
 
     0.923
EDS07033.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS07031.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.686
EDS07029.1
Hypothetical protein.
       0.494
EDS05681.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.485
EDS08779.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.479
EDS07027.1
Addiction module antitoxin, RelB/DinJ family; COG: COG3077 DNA-damage-inducible protein J.
  
     0.470
EDS05682.1
Hypothetical protein; KEGG: cal:orf19.6148 3.1e-05 USO2; intracellular protein transport K01553; COG: COG0845 Membrane-fusion protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.464
EDS08820.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
   0.446
EDS07921.1
Conserved hypothetical protein TIGR02185; COG: NOG13235 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.425
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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