STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07040.1EDD domain protein, DegV family; COG: COG1307 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (292 aa)    
Predicted Functional Partners:
EDS07572.1
KEGG: lwe:lwe1833 3.2e-119 DAK2 domain protein K00863; COG: COG1461 Predicted kinase related to dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
 
 0.931
EDS07571.1
Hypothetical protein; KEGG: sac:SACOL1773 0.00085 serA; D-3-phosphoglycerate dehydrogenase K00058; COG: COG1302 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
    0.626
EDS07041.1
Hypothetical protein; COG: COG1309 Transcriptional regulator.
       0.523
tctD
Transcriptional regulatory protein, C-terminal domain protein; KEGG: rha:RHA1_ro05622 5.6e-09 response regulator (protein-glutamate methylesterase) K07669; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 8.87.
 
     0.490
rex
CoA binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.450
EDS07039.1
DNA-binding helix-turn-helix protein; KEGG: par:Psyc_0717 0.0039 putative aminotransferase K00812; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.97.
       0.436
walR_6
Response regulator receiver domain protein; KEGG: eci:UTI89_C4496 1.2e-14 cpxR; transcriptional regulatory protein CpxR K07662; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.431
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
       0.431
resE_7
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spj:MGAS2096_Spy1107 6.8e-46 two-component system histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
       0.423
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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