STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07065.1TfoX N-terminal domain protein; COG: COG3070 Regulator of competence-specific genes; Psort location: Cytoplasmic, score: 8.87. (118 aa)    
Predicted Functional Partners:
EDS07064.1
Hypothetical protein; COG: COG4832 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
     0.929
EDS07066.1
COG: COG3708 Uncharacterized protein conserved in bacteria.
       0.748
EDS07067.1
HTH domain protein; COG: COG2378 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
 
     0.578
EDS07061.1
Hypothetical protein.
       0.535
EDS07062.1
Hypothetical protein.
       0.535
EDS07063.1
Hypothetical protein.
       0.535
EDS07068.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.474
EDS07069.1
Hypothetical protein; COG: NOG13222 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.471
ribN
Putative membrane protein; COG: COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.434
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.