Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07066.1COG: COG3708 Uncharacterized protein conserved in bacteria. (61 aa)    
Predicted Functional Partners:
EDS07064.1
Hypothetical protein; COG: COG4832 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.756
EDS07065.1
TfoX N-terminal domain protein; COG: COG3070 Regulator of competence-specific genes; Psort location: Cytoplasmic, score: 8.87.
       0.748
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.656
EDS07067.1
HTH domain protein; COG: COG2378 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
 
     0.620
EDS07069.1
Hypothetical protein; COG: NOG13222 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.558
EDS07061.1
Hypothetical protein.
       0.515
EDS07062.1
Hypothetical protein.
       0.515
EDS07063.1
Hypothetical protein.
       0.515
EDS07068.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.492
BceB_1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.466
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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