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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07068.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (101 aa)    
Predicted Functional Partners:
EDS07069.1
Hypothetical protein; COG: NOG13222 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.768
EDS07067.1
HTH domain protein; COG: COG2378 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.746
EDS07070.1
Hypothetical protein.
       0.575
ribN
Putative membrane protein; COG: COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; Psort location: CytoplasmicMembrane, score: 9.99.
       0.529
arnE
COG: COG2510 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.529
EDS07066.1
COG: COG3708 Uncharacterized protein conserved in bacteria.
       0.492
EDS07064.1
Hypothetical protein; COG: COG4832 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.474
EDS07065.1
TfoX N-terminal domain protein; COG: COG3070 Regulator of competence-specific genes; Psort location: Cytoplasmic, score: 8.87.
       0.474
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.402
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.402
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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