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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07081.1Putative small multi-drug export protein; COG: COG2426 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (170 aa)    
Predicted Functional Partners:
hisC
KEGG: lla:L0065 1.2e-89 hisC; histidinol-phosphate aminotransferase K00817; COG: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.788
aspC
Aminotransferase, class I/II; KEGG: cac:CAC2832 1.8e-118 PLP-dependent aminotransferase K00811; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score: 8.87.
       0.758
EDS07084.1
Hypothetical protein; COG: COG4866 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.699
scrK
Kinase, PfkB family; KEGG: ath:At1g06030 1.4e-63 T21E18.8; pfkB-type carbohydrate kinase family protein K00847; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.98.
 
     0.545
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.544
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.485
EDS07087.1
Hypothetical protein; COG: COG3872 Predicted metal-dependent enzyme; Psort location: CytoplasmicMembrane, score: 9.97.
       0.485
MurE_3
Mur ligase middle domain protein; KEGG: sab:SAB1824c 2.3e-70 probable UDP-N-acetylmuramyl tripeptide synthase K01924; COG: COG0769 UDP-N-acetylmuramyl tripeptide synthase; Psort location: Cytoplasmic, score: 8.87.
       0.458
cobQ_2
CobB/CobQ-like protein; KEGG: lsl:LSL_0587 1.6e-39 cobyric acid synthase K01957; COG: COG3442 Predicted glutamine amidotransferase; Psort location: Cytoplasmic, score: 8.87.
       0.451
EDS05424.1
Hypothetical protein; COG: NOG14194 non supervised orthologous group.
  
     0.413
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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