STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07092.1Radical SAM protein, TIGR01212 family; KEGG: fnu:FN1142 4.1e-71 oxygen-independent coproporphyrinogen III oxidase; COG: COG1242 Predicted Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87. (307 aa)    
Predicted Functional Partners:
EDS07093.1
Hypothetical protein; COG: NOG13733 non supervised orthologous group.
       0.843
EDS07091.1
Malic enzyme, NAD binding domain protein; KEGG: tte:TTE2332 9.9e-125 sfcA; malic enzyme K00027; COG: COG0281 Malic enzyme; Psort location: CytoplasmicMembrane, score: 9.97.
       0.838
EDS07090.1
Hypothetical protein.
       0.773
ChrA1_3
KEGG: shn:Shewana3_3300 4.5e-10 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
chrA1_2
KEGG: shn:Shewana3_3300 1.2e-06 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.547
EDS07056.1
Putative rRNA methylase; KEGG: btl:BALH_4325 9.3e-26 mraW; SAM-dependent methyltransferase, MraW methylase family K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.
 
    0.488
ydcP_2
Peptidase, U32 family; KEGG: cac:CAC1687 4.2e-117 collagenase family protease K08303; COG: COG0826 Collagenase and related proteases; Psort location: Cytoplasmic, score: 8.87.
 
    0.414
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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