Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ChrA1_3KEGG: shn:Shewana3_3300 4.5e-10 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99. (192 aa)    
Predicted Functional Partners:
chrA1_2
KEGG: shn:Shewana3_3300 1.2e-06 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
0.888
EDS07091.1
Malic enzyme, NAD binding domain protein; KEGG: tte:TTE2332 9.9e-125 sfcA; malic enzyme K00027; COG: COG0281 Malic enzyme; Psort location: CytoplasmicMembrane, score: 9.97.
       0.775
EDS07090.1
Hypothetical protein.
       0.773
EDS07092.1
Radical SAM protein, TIGR01212 family; KEGG: fnu:FN1142 4.1e-71 oxygen-independent coproporphyrinogen III oxidase; COG: COG1242 Predicted Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS07093.1
Hypothetical protein; COG: NOG13733 non supervised orthologous group.
       0.773
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.539
chrA1_1
KEGG: shn:Shewana3_3300 1.0e-11 chromate transporter, chromate ion transporter (CHR) family K00229; COG: COG2059 Chromate transport protein ChrA; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
0.528
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
       0.413
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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