STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puuDPeptidase C26; KEGG: fnu:FN0505 5.0e-43 anthranilate synthase component II K01656; COG: COG2071 Predicted glutamine amidotransferases. (247 aa)    
Predicted Functional Partners:
EDS07118.1
Renal dipeptidase family protein; KEGG: ctc:CTC00571 4.8e-61 membrane dipeptidase K01273; COG: COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog; Psort location: Cytoplasmic, score: 8.87.
     0.956
EDS05867.1
Renal dipeptidase family protein; KEGG: ctc:CTC00571 6.7e-39 membrane dipeptidase K01273; COG: COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog; Psort location: Cytoplasmic, score: 8.87.
     0.695
EDS07120.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.666
glnA-2
KEGG: chy:CHY_0704 5.3e-158 glnA1; glutamine synthetase K01915; COG: COG0174 Glutamine synthetase; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.652
EDS07121.1
Coat F domain protein; COG: NOG16819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.643
potD
ABC transporter, solute-binding protein; KEGG: cdi:DIP0495 8.2e-10 putative molybdenum ABC transport system (integral membrane and ATP-binding proteins) K02017:K02018; COG: COG0687 Spermidine/putrescine-binding periplasmic protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.503
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.448
puuR
Cupin domain protein; KEGG: psp:PSPPH_2917 7.1e-06 DNA-binding protein K00517; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.414
sutR
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 1.0e-06 dam; adenine-specific DNA methyltransferase K06223; COG: COG1396 Predicted transcriptional regulators.
  
  
 0.414
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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