Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS07120.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (60 aa)    
Predicted Functional Partners:
EDS07121.1
Coat F domain protein; COG: NOG16819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.958
puuD
Peptidase C26; KEGG: fnu:FN0505 5.0e-43 anthranilate synthase component II K01656; COG: COG2071 Predicted glutamine amidotransferases.
       0.666
EDS05736.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.557
EDS07316.1
Hypothetical protein; KEGG: spt:SPA0645 0.0018 fruB; fructose-specific IIA/FPR component of PTS system K02768:K02784.
  
     0.545
EDS06542.1
Hemerythrin HHE cation binding domain protein; KEGG: mmu:66576 0.0062 Uqcrh; ubiquinol-cytochrome c reductase hinge protein K00416; COG: COG2703 Hemerythrin; Psort location: Cytoplasmic, score: 8.87.
  
     0.474
EDS07118.1
Renal dipeptidase family protein; KEGG: ctc:CTC00571 4.8e-61 membrane dipeptidase K01273; COG: COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog; Psort location: Cytoplasmic, score: 8.87.
       0.470
EDS06329.1
COG: COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats; Psort location: Cytoplasmic, score: 8.87.
  
     0.462
EDS05482.1
Hypothetical protein; COG: NOG17819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.453
sodC
KEGG: cno:NT01CX_1771 1.4e-29 superoxide dismutase K00518; COG: COG2032 Cu/Zn superoxide dismutase; Psort location: Cytoplasmic, score: 8.87.
  
     0.447
EDS06888.1
Spore cortex protein YabQ (Spore_YabQ); Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.433
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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