Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srpR_2Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87. (208 aa)    
Predicted Functional Partners:
EDS07133.1
Hypothetical protein; COG: NOG29223 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.918
yxlF_6
KEGG: rha:RHA1_ro06063 5.0e-50 probable ABC transporter, ATP-binding component K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.889
EDS07134.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.518
EDS07130.1
Hypothetical protein.
       0.517
EDS06385.1
Hypothetical protein; COG: NOG07673 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.437
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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