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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HemE_5KEGG: swo:Swol_0417 7.7e-54 uroporphyrinogen decarboxylase K01599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87. (311 aa)    
Predicted Functional Partners:
nqrF
2Fe-2S iron-sulfur cluster binding domain protein; KEGG: aha:AHA_1141 3.8e-10 nqrF; NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit K00345; COG: COG3894 Uncharacterized metal-binding protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.809
metH_1
B12 binding domain protein; KEGG: mbu:Mbur_1365 2.1e-44 corrinoid methyltransferase K00548; COG: COG5012 Predicted cobalamin binding protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.802
metH_2
B12 binding domain protein; KEGG: mbu:Mbur_1365 1.8e-45 corrinoid methyltransferase K00548; COG: COG5012 Predicted cobalamin binding protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.794
EDS07137.1
Hypothetical protein; KEGG: swo:Swol_0417 0.0058 uroporphyrinogen decarboxylase K01599; Psort location: Cytoplasmic, score: 8.87.
       0.773
metI
ABC transporter, permease protein; KEGG: baa:BA_0884 1.5e-41 binding-protein-dependent transport systems inner membrane component K00294; COG: COG2011 ABC-type metal ion transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
       0.773
metQ
NLPA lipoprotein; COG: COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen.
       0.773
EDS06552.1
Hypothetical protein; KEGG: mmp:MMP0831 1.8e-22 mtbA; uroporphyrinogen decarboxylase (URO-D) K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87.
  
     0.773
yjiA
CobW/P47K family protein; KEGG: reh:H16_A3373 7.8e-18 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.
 
    0.674
EDS07141.1
Hypothetical protein; KEGG: mmr:Mmar10_0193 4.0e-08 ATP-dependent metalloprotease FtsH; COG: COG0465 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.
  
  
 0.651
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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